tooluniverse-phylogenetics Guide
Phylogenetic analysis — tree analysis, treeness, saturation (PhyKIT), parsimony-informative sites, alignment gap analysis, MAFFT alignment, DVMC, long-branch detection, BUSCO orthologs. Uses PhyKIT, Biopython, DendroPy. Use for phylogenetic tree QC, multi-gene phylogenomics, evolutionary-rate analysis, and comparative-genomics studies.
When to use tooluniverse-phylogenetics
Phylogenetic analysis — tree analysis, treeness, saturation (PhyKIT), parsimony-informative sites, alignment gap analysis, MAFFT alignment, DVMC, long-branch detection, BUSCO orthologs. Uses PhyKIT, Biopython, DendroPy. Use for phylogenetic tree QC, multi-gene phylogenomics, evolutionary-rate analysis, and comparative-genomics studies.
How to use tooluniverse-phylogenetics
tooluniverse-phylogenetics is a Claude skill in the SKILL.md format. Add it to your Claude environment from the source repository below, then it activates as a user-invocable skill when your task matches its description.