Single-cell RNA-seq analysis with scanpy/anndata — h5ad data loading, QC (mitochondrial fraction, doublets), normalization, dimensionality reduction (PCA, UMAP, t-SNE), clustering (Leiden, Louvain), marker gene identification, cell-type annotation, pseudotime/trajectory analysis. Use for any scRNA-seq workflow.
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SKILL.md / Manifest
https://raw.githubusercontent.com/mims-harvard/tooluniverse/main/plugin/skills/tooluniverse-single-cell/SKILL.mdRegistry
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