Phylogenetic analysis — tree analysis, treeness, saturation (PhyKIT), parsimony-informative sites, alignment gap analysis, MAFFT alignment, DVMC, long-branch detection, BUSCO orthologs. Uses PhyKIT, Biopython, DendroPy. Use for phylogenetic tree QC, multi-gene phylogenomics, evolutionary-rate analysis, and comparative-genomics studies.
This skill does not declare a tool allowlist. The agent host applies whatever default tools are available at runtime.
SKILL.md / Manifest
https://raw.githubusercontent.com/mims-harvard/tooluniverse/main/plugin/skills/tooluniverse-phylogenetics/SKILL.mdRegistry
github (via claudemarketplaces.com)